Guides and Tutorials

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Guidance on how to get started with our data :

The Marmoset Brain Database

Introduction video to the Marmoset Brain Database at the Brain/MINDS Data Portal

Contributor: Connectome Analysis Unit

Overview of the Tracer Injection Pages

Video explaining how to use the interactive viewers to explore the Marmoset Prefrontal Cortex Connectome data

Contributor: Connectome Analysis Unit

Dataportal Presentation Tracer Injection

A Beginners Tutorial on How to Inspect NIfTI Brain Data Using Python

Python code for beginners on how to inspect brain data in the NIfTI data format, with the Brain/MINDS atlas data being used as an example.
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Contributor: Connectome Analysis Unit

SimpleITK Python Atlas

Image Registration

Tutorial that explains step by step how to perform image registration using ANTs on data from Brain/MINDS data portal.
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Contributor: Connectome Analysis Unit

Registration ANTs Atlas

How to make a symmetric brain image.

Tutorial that explains step-by-step how to use image registration to make a symmetric brain image.
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Contributor: Connectome Analysis Unit

Registration ANTs Atlas

View Brain flat map using Connectome Workbench

Video tutorial that explains how to view Brain/MINDS Marmoset brain flat map package using Connectome Workbench

Contributor: Connectome Analysis Unit

Connectome Workbench Flatmap

Dataportal overview

Brain/MINDS Dataportal overview (as of September 2021)

Contributor: Connectome Analysis Unit

Dataportal Presentation