Guides and Tutorials

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Guidance on how to get started with our data :

Tutorial on How to retrieve Brain/MINDS datasets using DataLad

A DataLad starter that explain how to retrieve Brain/MINDS datasets using Python or the DataLad command.
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Contributor: Connectome Analysis Unit

DataLad Python cli

A Beginners Tutorial on How to Inspect NIfTI Brain Data Using Python

Python code for beginners on how to inspect brain data in the NIfTI data format, with the Brain/MINDS atlas data being used as an example.
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Contributor: Connectome Analysis Unit

SimpleITK Python Atlas

Image Registration

Tutorial that explains step by step how to perform image registration using ANTs on data from Brain/MINDS data portal.
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Contributor: Connectome Analysis Unit

Registration ANTs Atlas

How to make a symmetric brain image.

Tutorial that explains step-by-step how to use image registration to make a symmetric brain image.
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Contributor: Connectome Analysis Unit

Registration ANTs Atlas

View Brain flat map using Connectome Workbench

Video tutorial that explains how to view Brain/MINDS Marmoset brain flat map package using Connectome Workbench

Contributor: Connectome Analysis Unit

Connectome Workbench Flatmap