Brain/MINDS Marmoset Connectivity Resource

You can download the data from ->here<-. The dataset includes the STPT template images (with a population average STPT background image, a population average Nissl image, a population average backlit image and a population average HARDI. It further incooperates measurements derived from a population average HARDI. It also includes the ANTs warping field that maps data from our STPT template space to a flatmap-stack, and ANTs warping fields to map between other marmoset brain atlases (MARMOSET BRAIN CONNECTIVITY ATLAS, MARMOSET BRAIN MAPPING version 2 and 3, Brain/MINDS Marmoset Reference Atlas v1.1.0). It also includes the warping field between the STPT image space and the human MNI space, and a copy of the Nora-StackApp.

License:

Our image data is published under the CC BY 4.0 license (https://creativecommons.org/licenses/by/4.0/deed.en).

The downloadable dataset also includes data derived from four atlases that are work of other groups, which you might find helpful in reproducing and exploring our findings. Please carefully read the accompanying ‘Readme’ files, as some of the data is released under different licenses. If you find these data useful and plan to use it, then you must cite the original work, and accept their licenses. A summary of the atlas licenses is provided below:

• (1) Brain/MINDS 3D Marmoset Reference Brain Atlas 2019 (abbreviated as BMA) 
  • web-link: https://dataportal.brainminds.jp/atlas-package-download-main-page/bma-2019-ex-vivo.
  • Reference:
    • Woodward, Alexander; Gong, Rui; Nakae, Ken; Hata, Junichi; Okano, Hideyuki; Ishii, Shin; Yamaguchi, Yoko : Brain/MINDS 3D Marmoset Reference Brain Atlas 2019 (DataID: 4520) https://doi.org/10.24475/bma.4520
  • License: Released under a Creative Commons Attribution 4.0 International License; check the webpage for details.
• (2) Data from the Marmoset Brain Connectivity Atlas (abbreviated as MBCA)
  • web-link: https://www.marmosetbrain.org/reference
  • References:
    • The Marmoset Brain in Stereotaxic Coordinates” by Paxinos, Watson, Petrides, Rosa and Tokuno (Academic Press, 2012)
    • Majka P., Bai S., Bakola S., Bednarek S., Chan J.C., Jermakow N., Passarelli L., Reser D.H., Theodoni P., Worthy K.H., Wang X-J., Wójcik D.K., Mitra P.P. & Rosa M.G.P. (2020). Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey. Nature Communications. http://doi.org/10.1038/s41467-020-14858-0
    • Majka P., Chaplin T.A., Yu, H.-H., Tolpygo A., Mitra P.P., Wójcik D.K., & Rosa M.G.P. (2016). Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template. Journal of Comparative Neurology, 524(11), 2161–2181. http://doi.org/10.1002/cne.24023
  • Lincense: Released under a Creative Commons Attribution-ShareAlike 4.0 (CC-BY-SA) License; check the webpage for details.
• (3) Atlas data from the marmoset brain mapping project (version 2+3) (abbreviated as MBM)
  • web-link: https://marmosetbrainmapping.org/atlas.html
  • References:
    • version 3: Liu C, et al. Marmoset Brain Mapping V3: Population multi-modal standard volumetric and surface-based templates. Neuroimage (2021) doi:10.1016/j.neuroimage.2020.117620.
    • version 2: Liu C, et al. A resource for detailed 3D mapping of white matter pathways in the marmoset brain. Nature Neuroscience (2020) doi:10.1038/s41593-019-0575-0.
  • Lincense: Released under a Creative Commons Attribution-NonCommercial-ShareAlike (CC BY-NC-SA 4.0) License; check the webpage for details.