Tracer Injection Connection Matrix

These matrices provide a result of automatic registration to subcortical ROIs of Brain/MINDS annotation (see technical details). Here we chose the average intensity (instead of sum) for subcortical projections. Only the ipsilateral projections are shown. The abbreviations are as follows:

Hippocampal_formation_(HipF), Amygdalopiriform_transition_area_(APir), Central_amygdaloid_nucleus_(Ce), Posterior_cortical_amygdaloid_nucleus_(PCo), Medial_amygdaloid_nucleus_(Me), Anterior_cortical_amygdaloid_nucleus, Nucleus_of_the lateral_olfactry_tract_(LOT), Bed_nucleus_of_the_stria_terminalis_(ST), Basolateral_amygdaloid_nucleus_(BL), Basomedial_amygdaloid_nucleus;_magnocellular_part_(BMMC), Basomedial_amygdaloid_nucleus;_parvicellular_part_(BMPC), Lateral_amygdaloid_nucleus_(La), Claustrum_(Cl), Dorsal_nucleus_of_the_endopiriform_claustrum_(DEn), Intermediate_endopiriform_nucleus_(IEn), Ventral_nucleus_of_the_endopiriform_claustrum_(VEn), External_globus_pallidus_(EGP), Internal_globus_pallidus_(IGP), Substantia_nigra;_compact_part_(SNC), Substantia_nigra;ateral_part_(SNL), Substantia_nigra;_reticular_part_(SNR), Accumbens_nucleus;_core_(AcbC), Accumbens_nucleus;shell_(AcbSh), Caudate_nucleus_(Cd), Putamen_(Pu), Subthalamic_nucleus_(STh), Nucleus_of_the_horizontal limb_of_the_diagonal_band_(HDB), Nucleus_of_the_vertical limb_of_the_diagonal_band_(VDB), Lateral_septal_nuclei_(LS), Medial_septal_nucleus_(MS), Medial_geniculate_nucleus_(MG), Anterodorsal_thalamic_nucleus_(AD), Anteromedial_thalamic_nucleus_(AM), Anteroventral_thalamic_nucleus_(AV), Laterodorsal_thalamic_nucleus_(LD), Mediodorsal_thalamic_nucleus_(MD), Paratenial_nucleus_(PT), Anterior_pulvinar_(APul), Inferior_pulvinar_(IPul), Lateral_pulvinar_(LPul), Medial_pulvinar_(MPul), Angular_thalamic_nucleus_(Ang), Ventral_anterior_thalamic_nucleus_(VA), Ventral_lateral_thalamic_nucleus; lateral_part_(VLLa), Ventral_lateral_thalamic_nucleus;_medial_part_(VLM), Ventrolateral_thalamic_nucleus;_dorsal_part_(VLD), Posterior_thalamic_nuclear_group_(Po), Suprageniculate_thalamic_nucleus_(SG), Ventral_posterolateral_thalamic_nucleus_(VPL), Ventral_posteromedial_thalamic_nucleus_(VPM), Reticular_nucleus_(Rt), Zona_incerta_(ZI), Dorsalateral_geniculate_nucleus_(DLG), Habenular_nucleus_(Hb), Paraventricular_thalamic_nucleus_(PV), Arcuate_hypothalamic_nucleus_(Arc), Dorsomedial_hypothalamic_nucleus_(DM), Medial_mammillary_nucleus;_medial_part_(MM), Medial_tuberal_nucleus_(MTu), Lateral_preoptic_area_(LPO), Medial_preoptic_nucleus_(MPO), Supraoptic_nucleus_(SO), Ventromedial_hypothalamic_nucleus_(VMH), Medial_pretectal_area_(MPT), Nucleus_of_the_optic_tract_(OT), Central_nucleus_of_the_inferior_colliculus_(CIC), Dorsal_cortex_of_the_inferior_colliculus_(DCIC), External_cortex_of_the_inferior_colliculus_(ECIC), Interstitial_nucleus_of_Cajal_(InC), Nucleus_of_the_brachium_of_the_inferior_colliculus_(BIC), Occulomotor_nucleus_(3N), Red_nucleus_(R), Deep_gray_layer_of_the_superior_colliculus_(DpG), Intermediate_gray_layer_of_the_superior_colliculus_(InG), Superficial_gray_layer_of_the_superior_colliculcus_(SuG), Trochlear_nucleus_(4N), Intermediate_nucleus_of_the_lateral_lemniscus_(ILL), Pontine_nuclei_(Pn), Principal_sensory_trigeminal_nucleus_(Pr5), Reticulotegmental_nucleus_of_the_pons_(RtTg), Ventral_nucleus_of_the_lateral_lemniscus_(VLL), Motor_trigeminal_nucleus, Nucleus_of_the_spinal_trigeminal_tract, Abducens_nucleus, Dorsal_cochlear_nucleus, Ventral_cochlear_nucleus;_anterior_part, Ventral_cochlear_nucleus;_posterior_part, Facial_nucleus, Cuneate_nucleus, External_cuneate_nucleus, Gracile_nucleus, Hypoglossal_nucleus, Prepositus_nucleus_(Pr), Lateral_reticular_nucleus_(LRt), Solitary_nucleus_(Sol), Lateral_vestibular_nucleus_(LVe), Medial_vestibular_nucleus_(MVe), Spinal_vestizular_nucleus_(SpVe), Superior_vestibular_nucleus_(SuVe), 222 Anterior_interposed_cerebellar_nucleus_(IntA), Lateral_(dentate)_cerebellar_nucleus_(Lat), Medial_cerebellar_nucleus_(Med), Posterior_interposed_cerebellar_nucleus_(IntP).