10.24475/bma.2799 Atlas Alexander Woodward 0000-0003-3068-1401 Neuroinformatics Japan Center, RIKEN Brain Science Institute Connectome Analysis Unit, Integrative Computational Brain Science Collaboration Division, RIKEN Center for Brain Science JPN 2017 2020-04-22 Tsutomu Hashikawa Neuroinformatics Japan Center, RIKEN Brain Science Institute Laboratory for Symbolic Cognitive Development, RIKEN Brain Science Institute Masahide Maeda Neuroinformatics Japan Center, RIKEN Brain Science Institute Takaaki Kaneko Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute Keigo Hikishima 0000-0003-1133-1297 Animal Resources Section, Okinawa Institute of Science and Technology Graduate University Atsushi Iriki Laboratory for Symbolic Cognitive Development, RIKEN Brain Science Institute Hideyuki Okano 0000-0001-7482-5935 Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute Yoko Yamaguchi Neuroinformatics Japan Center, RIKEN Brain Science Institute 1.1 NIfTI-1 en 103.35 MB Creative Commons Attribution 4.0 International (CC BY 4.0) The dataset includes NIfTI files of MRI T2 ex-vivo data; reconstructed Nissl stained images of the same brain, registered to the shape of the MRI; brain region segmentation (with separate color lookup table); and gray, mid-cortical and white matter boundary segmentation. In addition, a 3D Slicer scene file is provided that can be used for testing the dataset within the freely downloadable 3D Slicer software ([https://www.slicer.org/](https://www.slicer.org/)). The scene file can be dragged directly into 3D Slicer and the atlas can be used immediately. Files can be downloaded individually or as one zip file. </br>The atlas can be viewed online via the Zooming Atlas Viewer (ZAV) by clicking [here](https://www.bminds.brain.riken.jp/ZAViewer_Reference_Brain/). Japan Agency for Medical Research and Development (AMED) https://doi.org/10.13039/100009619